Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015846911.1_cds_XP_016509822.1_22725
CDS Infomation

[gene=LOC107827238] [db_xref=GeneID:107827238] [protein=secologanin synthase-like] [protein_id=XP_016509822.1] [location=join(1262..1532,1695..1915,2003..2250,2362..2746,3581..4003)] [gbkey=CDS]
Sequence

ATGAGTATTGCAGTTTTAATTGCTCTACCAATATGCCTTTCATTCTCCTTTTGGTGCCTG
AAATTGCTGTATTTGATATGGTGGCGGCCAAAAACAGTGGAAAAGGAGCTGCGAAAACAA
AGAGTATATGGCCGTCCATATAGATTTCTTTATGGAAATCTAAAGGAGATGATGGAAATG
AACAAAATAGCTAAATCTAAACCCATGCCTTTGAATCACGACTACACCCATCGACTAAAT
CCTTTGTTCTATGAGCTCGCCACCACTTACAAGAAACTTTTCTTATTTTGGCTAGGACCG
ATACCTCGAGTGACCATAATGGATCCAAAGCTAATACGGGAAGTACTATCAAATAAATCG
GGTGGGTTCAGAAAACCAAAAATCAGTGCTTTCCTCAAGCTATTTGTAACAGGATTGGGG
ACTTACGATGGTGAAAAATGGGCTAAACACAGAAAAATTCTTAATCCAGCTTTCCACTTG
GAAAAATTAAAGCTTATGTTGGGGGCATTTACAGAGTGTACAGAAAAAATGATAAGCAGT
TGGGACAAGTTAACTGAATCAAAGGGTTCTTGCGAATTGGATATTTCACAAGAATTTCAT
AGTTTAACCGGAGATATACTATCAAAAGCAGCCTTTGGTAGTAACTTTGAAGAAGGGAAG
TTAATATTTTCGCTTCTGAGGGAACAGTGTGAACTTGTTTTCACTGCAAAACTTGCTATT
AATGTCTTCCCTTGGTTAAGGTTTGTGCCAACAAAAACTAATAGAAGAAGATTGTACATC
TATAACATAGTCCGTAGTTCGCTAAAAAGGATAATAGAGAAGCGAGAGAAAGAGGTACAA
TCAGGAAAAGCACACAATGAGGACCTCTTGGGCTTGTTGATGAAATCTAATCAAGAAGAA
AAACAAGGGAATAAGAACTCGAACAAGGGAATGAGTACAGAAGATGTAATAGAAGAGTGC
AACTCTTTCTATTTTGCGGGTCAAGAGACTACTGCAACTTTATTAACTTGGACTGCAATT
GTTTTGACTATGCATCCAGATTGGCAAGAAAAAGCTAGGAATGAAGTTCTTGAAATCATT
GGAAAAGATGAACCTAAGTTTGATCAACTGAACCAGCTAAAAATTGTGACTATGATCTTG
CACGAGGTTCTGAGGTTATATCCGTCAGGTTCTCTTGTTAGAGAAACAAACGAAGAGACA
AAACTTGGAGACTATATAATTCCATCAGGTGCACAGCTTTTGGTGCCTCTGCAAATAATC
CACCGCGACACTGAGCAATGGGGAGAAGATGCTCTTATTTTCAATCCAGAAAGATTCTCA
GAAGGAGTATCAAAAGCAGCCAAAGATTTGATGTATTTTCCCTTTGGTTGGGGTTCTCGT
ATTTGCCTTGGAATGAATTTCGCTATGATTCAAGTCAAACTTGTTTTGGCTAAAATCTTA
CAGAATTACTCGTTTGAACTCTCTCCCTCCTATGCTCATGGCCCGACCATGACCGCTCTG
GTTCTTCAACCTCAGTATGGTGCACCTGTCATTGTGCGAAAGCTTTGA

Peptide Sequence

PEP ID

XP_016509822.1
PEP Infomation

PREDICTED: secologanin synthase-like [Nicotiana tabacum]
Sequence

MSIAVLIALPICLSFSFWCLKLLYLIWWRPKTVEKELRKQRVYGRPYRFLYGNLKEMMEM
NKIAKSKPMPLNHDYTHRLNPLFYELATTYKKLFLFWLGPIPRVTIMDPKLIREVLSNKS
GGFRKPKISAFLKLFVTGLGTYDGEKWAKHRKILNPAFHLEKLKLMLGAFTECTEKMISS
WDKLTESKGSCELDISQEFHSLTGDILSKAAFGSNFEEGKLIFSLLREQCELVFTAKLAI
NVFPWLRFVPTKTNRRRLYIYNIVRSSLKRIIEKREKEVQSGKAHNEDLLGLLMKSNQEE
KQGNKNSNKGMSTEDVIEECNSFYFAGQETTATLLTWTAIVLTMHPDWQEKARNEVLEII
GKDEPKFDQLNQLKIVTMILHEVLRLYPSGSLVRETNEETKLGDYIIPSGAQLLVPLQII
HRDTEQWGEDALIFNPERFSEGVSKAAKDLMYFPFGWGSRICLGMNFAMIQVKLVLAKIL
QNYSFELSPSYAHGPTMTALVLQPQYGAPVIVRKL

Transcript Sequence

Gene sequence data has not been registered.